Links to software supporting NeuroML
Details on the current support for NeuroML in a number of software applications can be found here.
Links to Other Related Projects
Standards Projects for the Biosciences
- INCF Programs: Standards and Guidelines for Large-Scale Modeling
- SBML: The Systems Biology Markup Language
- CellML: Model Sharing in biology and beyond
- BrainML: Includes standards for electrophysiology data
- MGED/MAGE/MIAME: XML standards for the microarray community
- CARMEN: Code Analysis, Repository and Modelling for E-Neuroscience: The CARMEN Project is a consortium effort to create a virtual laboratory for neurophysiology led by 11 UK universities. CARMEN researchers are contributing to the development of NeuroML as an aid to model sharing.
- FACETS: The Fast Analog Computing with Emergent Transient States Project was initiated with the goal of creating a foundation for novel computing paradigms based on concepts observed in biological nervous systems. Early efforts in the areas of theory and models led to the development of FacetsML, which focused on model specifications at the neuronal network level. At this point, all of the functionality of FacetsML has been included in NeuroML so that PyNN can interface directly with NeuroML.
Database Projects Relevant to Neural Models
- ModelDB: Curated database of published neuroscience models
- NeuronDB: Searchable database of neuronal properties with links to neuron types
- NeuroMorpho.Org: Curated inventory of digitally reconstructed neurons
- NeuroSys: Database system with Napster influences
- CoCoMac: Connectivity database for Macaque monkey cortex
- neurodatabase.org: BrainML Data Server
- Virtual Ratbrain: MorphML-based tools for neural reconstructions
General Information on XML Tools and Technology
- XML: A general XML tutorial
- XML Schema: A tutorial on XML schemas with links to other references
- JAXB: Bind an XML schema to a Java representation
- Protege: Tools for defining ontologies