Models
The following are a number of published models which have been converted to NeuroML. They are available as either a zip file containing just the NeuroML elements, or as a neuroConstruct project file, which can be used to map the NeuroML elements onto NEURON, GENESIS, etc.
These have been converted to NeuroML from published biophysically detailed cell and network models. Some examples more abstract examples of models illustrating support for NeuroML in neuroConstruct can be found here.
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Project name: GranuleCell A project illustrating the behaviour of the Granule Cell model from: Maex, R and De Schutter, E. Synchronization of Golgi and Granule Cell Firing in a Detailed Network Model of the Cerebellar Granule Cell Layer J Neurophysiol, Nov 1998; 80: 2521 - 2537. Based on scripts obtained from: http://www.tnb.ua.ac.be/models/network.shtml. This project shows how a cell model with multiple active conductances can produce the same behaviour on NEURON and GENESIS through the specification of channel mechanisms in ChannelML. |
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Project name: GranCellLayer An extension in 3D of the Granule Cell Layer model from: Maex, R and De Schutter, E. Synchronization of Golgi and Granule Cell Firing in a Detailed Network Model of the Cerebellar Granule Cell Layer J Neurophysiol, Nov 1998; 80: 2521 - 2537. The default Simulation Configuration replicates the 1D 75 granule cell example from: http://www.tnb.ua.ac.be/models/network.shtml |
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Project name: MainenEtAl_PyramidalCell Implementation of the Mainen et al. pyramidal cell model from: Mainen ZF, Joerges J, Huguenard JR, Sejnowski TJ (1995) A model of spike initiation in neocortical pyramidal neurons. Neuron 15:1427-39. This project is based on scripts obtained from: http://senselab.med.yale.edu/senselab/modeldb/ShowModel.asp?model=8210 |
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